plot_frequency_barplot() plots cell population frequencies for each level in group_var as stacked barplot.
Usage
plot_frequency_barplot(
fcd = condor,
cluster_slot,
cluster_var,
group_var,
facet_var = NULL,
color_palette = cluster_palette,
title = "Frequency"
)Arguments
- fcd
flow cytometry data set, that has been subjected to clustering or cell type label prediction with cyCONDOR
- cluster_slot
string specifying which clustering slot to use to find variable specified in cluster_var.
- cluster_var
string specifying variable name in cluster_slot that identifies cell population labels to be used (e.g. clusters, metaclusters or predicted labels).
- group_var
string indicating variable name in cell_anno that defines grouping variable to be used (x-axis), e.g. group or sample ID.
- facet_var
(optional) string indicating variable name in cell_anno that should be used to group levels in group_var via faceting.
- color_palette
vector of colors to be used to fill bar chart plots
- title
title of the plot, default is "Frequency"