plot_counts_barplot() plots cell population counts for each level in group_var as bar plot.
Usage
plot_counts_barplot(
fcd = condor,
cluster_slot,
cluster_var,
group_var,
facet_var = NULL,
facet_by_clustering = F,
facet_ncol = NULL,
color_palette = cluster_palette,
title = "Counts"
)Arguments
- fcd
flow cytometry data set, that has been subjected to clustering or cell type label prediction with cyCONDOR
- cluster_slot
string specifying which clustering slot to use to find variable specified in cluster_var
- cluster_var
string specifying variable name in cluster_slot that identifies cell population labels to be used (e.g. clusters, metaclusters or predicted labels).
- group_var
string indicating variable name in cell_anno that defines grouping variable to be used (x-axis), e.g. group or sample ID.
- facet_var
(optional) string indicating variable name in cell_anno that should be used to group levels in group_var via faceting.
- facet_by_clustering
logical, if set to TRUE, the plot will be faceted by cell populations specified in cluster_var. If set to FALSE not faceting by population will be applied (default). If both, facet_var and facet_by_clustering are used plot will be faceted by both using applying facet_grid.
- facet_ncol
numeric, indicating how many columns faceted plot should have, if either facet_var or Facet_by_clustering is used.
- color_palette
vector of colors to be used to fill bar chart plots
- title
title of the plot, default is "Counts"