Add statistical results from the diffcyt package to the fcd.

Wrapper function to include the statistical results calculated using the diffcyt package into the fcd file.

Usage

add_diffcyt_statistics(fcd = condor, input, group1 = "ctrl", group2 = "pat")

Arguments

fcd

flow cytometry dataset, that has been subjected to clustering or cell type label prediction with cyCONDOR before.

input

dataframe containing the statistical results from the diffcyt package. Example: input <- as.data.frame(diffcyt::topTable(res_DA, all = TRUE)).

group1

First group of the comparison.

group2

Second group of the comparison.

Value

the fcd containing the statistical results from the diffcyt package

Details

add_diffcyt_statistics