Optimized workflow for single-cell transcriptomics on infectious diseases including COVID-19
Published in Cell, 2020
In December 2019, a new coronavirus, SARS-CoV-2, which causes the respiratory illness that led to the COVID-19 pandemic, was reported. In the face of such a new pathogen, special precautions must be taken to examine potentially infectious materials due to the lack of knowledge on disease transmissibility, infectivity, and molecular pathogenicity. Here, we present a complete and safe workflow for performing scRNA-seq experiments on blood samples of infected patients from cell isolation to data analysis using the micro-well based BD Rhapsody platform.
For complete information on the use and execution of this protocol, please refer to Schulte-Schrepping et al. (2020).
Recommended citation: Elena De Domenico, Lorenzo Bonaguro*, Jonas Schulte-Schrepping, Matthias Becker, Kristian Händler, Joachim L Schultze. (2020). "Optimized workflow for single-cell transcriptomics on infectious diseases including COVID-19" STAR Protocol. 1(3)
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